Mental Health issues/clearance concern

So, I answered openly and honestly about my mental health question. I have up until this point, fully complied with treatment and medication. My therapist put down in spite of this, that I have a condition that impairs my judgement and that my prognosis is uncertain. She told me, she would make it clear that I made improvements on my condition and that I have complied fully with all treatment thus far.

What I am worried about, is how the adjuciators will look at this. I am worried about this being on my permanent record if I try to apply for future clearances. Its making me consider halting the investigation process, and more or less just giving up on this. I am not sure what to do, my therapist wrote down things about me that just weren’t good and it makes me think my final clearance will be denied.

What should I do, and how should I proceed?

I was never hospitalized, put on a 72 hour hold, or on a court order forced to take thearpy. This was all voluntary. There was a need for an intervention when I confessed I was suicidal, but nothing bad or concrete ever came of that. It just sucks that me being in a dark place recently can be used against me like this