Difference betweem counterintelligence Screening and SI Interview

When I was doing my pre processing I was told that I have to go to Fort-Meade for Counterintelligence interview and I was being interviewed there for about an hour and they were basically asking the same questions as Special Investigator was asking me but in Fort-Meade they were scanning my documents simultaneously and putting my information in a computer so my question is that what’s the difference between Special investigator and Fort-Meade agents if they were gonna do the same thing.

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